Dataset¶
Warning
Experimental: The Java module dataset
is currently under early
development. API might be changed in each release of Apache Arrow until it
gets mature.
Dataset is an universal layer in Apache Arrow for querying data in different formats or in different partitioning strategies. Usually the data to be queried is supposed to be located from a traditional file system, however Arrow Dataset is not designed only for querying files but can be extended to serve all possible data sources such as from inter-process communication or from other network locations, etc.
Getting Started¶
Below shows a simplest example of using Dataset to query a Parquet file in Java:
// read data from file /opt/example.parquet
String uri = "file:/opt/example.parquet";
BufferAllocator allocator = new RootAllocator(Long.MAX_VALUE);
DatasetFactory factory = new FileSystemDatasetFactory(allocator,
NativeMemoryPool.getDefault(), FileFormat.PARQUET, uri);
Dataset dataset = factory.finish();
Scanner scanner = dataset.newScan(new ScanOptions(100)));
List<ArrowRecordBatch> batches = StreamSupport.stream(
scanner.scan().spliterator(), false)
.flatMap(t -> stream(t.execute()))
.collect(Collectors.toList());
// do something with read record batches, for example:
analyzeArrowData(batches);
// finished the analysis of the data, close all resources:
AutoCloseables.close(batches);
AutoCloseables.close(factory, dataset, scanner);
Note
ArrowRecordBatch
is a low-level composite Arrow data exchange format
that doesn’t provide API to read typed data from it directly.
It’s recommended to use utilities VectorLoader
to load it into a schema
aware container VectorSchemaRoot
by which user could be able to access
decoded data conveniently in Java.
See also
Load record batches with VectorSchemaRoot.
Schema¶
Schema of the data to be queried can be inspected via method
DatasetFactory#inspect()
before actually reading it. For example:
// read data from local file /opt/example.parquet
String uri = "file:/opt/example.parquet";
BufferAllocator allocator = new RootAllocator(Long.MAX_VALUE);
DatasetFactory factory = new FileSystemDatasetFactory(allocator,
NativeMemoryPool.getDefault(), FileFormat.PARQUET, uri);
// inspect schema
Schema schema = factory.inspect();
For some of the data format that is compatible with a user-defined schema, user
can use method DatasetFactory#inspect(Schema schema)
to create the dataset:
Schema schema = createUserSchema()
Dataset dataset = factory.finish(schema);
Otherwise when the non-parameter method DatasetFactory#inspect()
is called,
schema will be inferred automatically from data source. The same as the result
of DatasetFactory#inspect()
.
Also, if projector is specified during scanning (see next section
Projection), the actual schema of output data can be got
within method Scanner::schema()
:
Scanner scanner = dataset.newScan(
new ScanOptions(100, Optional.of(new String[] {"id", "name"})));
Schema projectedSchema = scanner.schema();
Projection¶
User can specify projections in ScanOptions. For FileSystemDataset
, only
column projection is allowed for now, which means, only column names
in the projection list will be accepted. For example:
String[] projection = new String[] {"id", "name"};
ScanOptions options = new ScanOptions(100, Optional.of(projection));
If no projection is needed, leave the optional projection argument absent in ScanOptions:
ScanOptions options = new ScanOptions(100, Optional.empty());
Or use shortcut construtor:
ScanOptions options = new ScanOptions(100);
Then all columns will be emitted during scanning.
Read Data from HDFS¶
FileSystemDataset
supports reading data from non-local file systems. HDFS
support is included in the official Apache Arrow Java package releases and
can be used directly without re-building the source code.
To access HDFS data using Dataset API, pass a general HDFS URI to
FilesSystemDatasetFactory
:
String uri = "hdfs://{hdfs_host}:{port}/data/example.parquet";
BufferAllocator allocator = new RootAllocator(Long.MAX_VALUE);
DatasetFactory factory = new FileSystemDatasetFactory(allocator,
NativeMemoryPool.getDefault(), FileFormat.PARQUET, uri);
Native Memory Management¶
To gain better performance and reduce code complexity, Java
FileSystemDataset
internally relys on C++
arrow::dataset::FileSystemDataset
via JNI.
As a result, all Arrow data read from FileSystemDataset
is supposed to be
allocated off the JVM heap. To manage this part of memory, an utility class
NativeMemoryPool
is provided to users.
As a basic example, by using a listenable NativeMemoryPool
, user can pass
a listener hooking on C++ buffer allocation/deallocation:
AtomicLong reserved = new AtomicLong(0L);
ReservationListener listener = new ReservationListener() {
@Override
public void reserve(long size) {
reserved.getAndAdd(size);
}
@Override
public void unreserve(long size) {
reserved.getAndAdd(-size);
}
};
NativeMemoryPool pool = NativeMemoryPool.createListenable(listener);
FileSystemDatasetFactory factory = new FileSystemDatasetFactory(allocator,
pool, FileFormat.PARQUET, uri);
Also, it’s a very common case to reserve the same amount of JVM direct memory
for the data read from datasets. For this use a built-in utility
class DirectReservationListener
is provided:
NativeMemoryPool pool = NativeMemoryPool.createListenable(
DirectReservationListener.instance());
This way, once the allocated byte count of Arrow buffers reaches the limit of
JVM direct memory, OutOfMemoryError: Direct buffer memory
will
be thrown during scanning.
Note
The default instance NativeMemoryPool.getDefaultMemoryPool()
does
nothing on buffer allocation/deallocation. It’s OK to use it in
the case of POC or testing, but for production use in complex environment,
it’s recommended to manage memory by using a listenable memory pool.
Note
The BufferAllocator
instance passed to FileSystemDatasetFactory
’s
constructor is also aware of the overall memory usage of the produced
dataset instances. Once the Java buffers are created the passed allocator
will become their parent allocator.
Native Object Resource Management¶
As another result of relying on JNI, all components related to
FileSystemDataset
should be closed manually to release the corresponding
native objects after using. For example:
DatasetFactory factory = new FileSystemDatasetFactory(allocator,
NativeMemoryPool.getDefault(), FileFormat.PARQUET, uri);
Dataset dataset = factory.finish();
Scanner scanner = dataset.newScan(new ScanOptions(100));
// do something
AutoCloseables.close(factory, dataset, scanner);
If user forgets to close them then native object leakage might be caused.